<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.17"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>SPHinXsys: SPH::MonoFieldElectroPhysiology Class Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="search/searchdata.js"></script>
<script type="text/javascript" src="search/search.js"></script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
 <tbody>
 <tr style="height: 56px;">
  <td id="projectlogo"><img alt="Logo" src="logo.png"/></td>
  <td id="projectalign" style="padding-left: 0.5em;">
   <div id="projectname">SPHinXsys
   &#160;<span id="projectnumber">alpha version</span>
   </div>
  </td>
 </tr>
 </tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.17 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search');
/* @license-end */
</script>
<script type="text/javascript" src="menudata.js"></script>
<script type="text/javascript" src="menu.js"></script>
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
$(function() {
  initMenu('',true,false,'search.php','Search');
  $(document).ready(function() { init_search(); });
});
/* @license-end */</script>
<div id="main-nav"></div>
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
     onmouseover="return searchBox.OnSearchSelectShow()"
     onmouseout="return searchBox.OnSearchSelectHide()"
     onkeydown="return searchBox.OnSearchSelectKey(event)">
</div>

<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0" 
        name="MSearchResults" id="MSearchResults">
</iframe>
</div>

<div id="nav-path" class="navpath">
  <ul>
<li class="navelem"><a class="el" href="namespace_s_p_h.html">SPH</a></li><li class="navelem"><a class="el" href="class_s_p_h_1_1_mono_field_electro_physiology.html">MonoFieldElectroPhysiology</a></li>  </ul>
</div>
</div><!-- top -->
<div class="header">
  <div class="summary">
<a href="#pub-methods">Public Member Functions</a> &#124;
<a href="#pro-methods">Protected Member Functions</a> &#124;
<a href="#pro-attribs">Protected Attributes</a> &#124;
<a href="class_s_p_h_1_1_mono_field_electro_physiology-members.html">List of all members</a>  </div>
  <div class="headertitle">
<div class="title">SPH::MonoFieldElectroPhysiology Class Reference</div>  </div>
</div><!--header-->
<div class="contents">

<p>material class for electro_physiology.  
 <a href="class_s_p_h_1_1_mono_field_electro_physiology.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="diffusion__reaction_8h_source.html">diffusion_reaction.h</a>&gt;</code></p>

<p>Inherits <a class="el" href="class_s_p_h_1_1_diffusion_reaction_material.html">SPH::DiffusionReactionMaterial&lt; SolidParticles, Solid &gt;</a>.</p>

<p>Inherited by <a class="el" href="class_s_p_h_1_1_local_mono_field_electro_physiology.html">SPH::LocalMonoFieldElectroPhysiology</a>.</p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a92c28885d3b34620d278e47f0351fcb4"><td class="memItemLeft" align="right" valign="top"><a id="a92c28885d3b34620d278e47f0351fcb4"></a>
&#160;</td><td class="memItemRight" valign="bottom"><b>MonoFieldElectroPhysiology</b> (<a class="el" href="class_s_p_h_1_1_electro_physiology_reaction.html">ElectroPhysiologyReaction</a> *electro_physiology_reaction)</td></tr>
<tr class="separator:a92c28885d3b34620d278e47f0351fcb4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2d0c9b6a7c8406b9c15bc9a78b3c73ca"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_mono_field_electro_physiology.html#a2d0c9b6a7c8406b9c15bc9a78b3c73ca">initializeDiffusion</a> () override</td></tr>
<tr class="separator:a2d0c9b6a7c8406b9c15bc9a78b3c73ca"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_class_s_p_h_1_1_diffusion_reaction_material')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="class_s_p_h_1_1_diffusion_reaction_material.html">SPH::DiffusionReactionMaterial&lt; SolidParticles, Solid &gt;</a></td></tr>
<tr class="memitem:ac3b04fe5b64e8374b18142c63dcadc74 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_diffusion_reaction_material.html#ac3b04fe5b64e8374b18142c63dcadc74">DiffusionReactionMaterial</a> ()</td></tr>
<tr class="separator:ac3b04fe5b64e8374b18142c63dcadc74 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a129c308dd850749a9e8a5161630121f9 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_diffusion_reaction_material.html#a129c308dd850749a9e8a5161630121f9">DiffusionReactionMaterial</a> (<a class="el" href="class_s_p_h_1_1_base_reaction_model.html">BaseReactionModel</a> *species_reaction)</td></tr>
<tr class="separator:a129c308dd850749a9e8a5161630121f9 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2627cebc88df89c30e4ed44ccbc7ce19 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="a2627cebc88df89c30e4ed44ccbc7ce19"></a>
<a class="el" href="classsize__t.html">size_t</a>&#160;</td><td class="memItemRight" valign="bottom"><b>NumberOfSpecies</b> ()</td></tr>
<tr class="separator:a2627cebc88df89c30e4ed44ccbc7ce19 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a8b07e6fc0cf6ef50a678c3c058b79ad1 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="a8b07e6fc0cf6ef50a678c3c058b79ad1"></a>
<a class="el" href="classsize__t.html">size_t</a>&#160;</td><td class="memItemRight" valign="bottom"><b>NumberOfSpeciesDiffusion</b> ()</td></tr>
<tr class="separator:a8b07e6fc0cf6ef50a678c3c058b79ad1 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a371fb0c94dfdc46b3cddb92602c5221b inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="a371fb0c94dfdc46b3cddb92602c5221b"></a>
StdVec&lt; <a class="el" href="class_s_p_h_1_1_base_diffusion.html">BaseDiffusion</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>SpeciesDiffusion</b> ()</td></tr>
<tr class="separator:a371fb0c94dfdc46b3cddb92602c5221b inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2ea37d4de9c839ad3422e8c4e3399062 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="a2ea37d4de9c839ad3422e8c4e3399062"></a>
<a class="el" href="class_s_p_h_1_1_base_reaction_model.html">BaseReactionModel</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>SpeciesReaction</b> ()</td></tr>
<tr class="separator:a2ea37d4de9c839ad3422e8c4e3399062 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1914cd1ab46d526791f9256cd3317317 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="a1914cd1ab46d526791f9256cd3317317"></a>
std::map&lt; std::string, <a class="el" href="classsize__t.html">size_t</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>SpeciesIndexMap</b> ()</td></tr>
<tr class="separator:a1914cd1ab46d526791f9256cd3317317 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aab5473ccc3ee73b04028b239cd18614c inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="aab5473ccc3ee73b04028b239cd18614c"></a>
void&#160;</td><td class="memItemRight" valign="bottom"><b>assignDiffusionReactionParticles</b> (<a class="el" href="class_s_p_h_1_1_diffusion_reaction_particles.html">DiffusionReactionParticles</a>&lt; <a class="el" href="class_s_p_h_1_1_solid_particles.html">SolidParticles</a>, <a class="el" href="class_s_p_h_1_1_solid.html">Solid</a> &gt; *diffusion_reaction_particles)</td></tr>
<tr class="separator:aab5473ccc3ee73b04028b239cd18614c inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a07649784c6535035ad8331c87ec19e30 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="a07649784c6535035ad8331c87ec19e30"></a>
Real&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_diffusion_reaction_material.html#a07649784c6535035ad8331c87ec19e30">getDiffusionTimeStepSize</a> (Real smoothing_length)</td></tr>
<tr class="memdesc:a07649784c6535035ad8331c87ec19e30 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get diffusion time step size. Here, I follow the reference: <a href="https://www.uni-muenster.de/imperia/md/content/physik_tp/lectures/ws2016-2017/num_methods_i/heat.pdf">https://www.uni-muenster.de/imperia/md/content/physik_tp/lectures/ws2016-2017/num_methods_i/heat.pdf</a>. <br /></td></tr>
<tr class="separator:a07649784c6535035ad8331c87ec19e30 inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a0ded076a36aef8a60f58066a9cd7eb8d inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="a0ded076a36aef8a60f58066a9cd7eb8d"></a>
virtual <a class="el" href="class_s_p_h_1_1_diffusion_reaction_material.html">DiffusionReactionMaterial</a>&lt; <a class="el" href="class_s_p_h_1_1_solid_particles.html">SolidParticles</a>, <a class="el" href="class_s_p_h_1_1_solid.html">Solid</a> &gt; *&#160;</td><td class="memItemRight" valign="bottom"><b>ThisObjectPtr</b> () override</td></tr>
<tr class="separator:a0ded076a36aef8a60f58066a9cd7eb8d inherit pub_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_class_s_p_h_1_1_solid"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_class_s_p_h_1_1_solid')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="class_s_p_h_1_1_solid.html">SPH::Solid</a></td></tr>
<tr class="memitem:a4bfd9d0dbed62cce304e73f65b57fc74 inherit pub_methods_class_s_p_h_1_1_solid"><td class="memItemLeft" align="right" valign="top"><a id="a4bfd9d0dbed62cce304e73f65b57fc74"></a>
void&#160;</td><td class="memItemRight" valign="bottom"><b>assignSolidParticles</b> (<a class="el" href="class_s_p_h_1_1_solid_particles.html">SolidParticles</a> *solid_particles)</td></tr>
<tr class="separator:a4bfd9d0dbed62cce304e73f65b57fc74 inherit pub_methods_class_s_p_h_1_1_solid"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a74624582dd6fa6d5696ee7bf649b6e3f inherit pub_methods_class_s_p_h_1_1_solid"><td class="memItemLeft" align="right" valign="top"><a id="a74624582dd6fa6d5696ee7bf649b6e3f"></a>
Real&#160;</td><td class="memItemRight" valign="bottom"><b>ContactFriction</b> ()</td></tr>
<tr class="separator:a74624582dd6fa6d5696ee7bf649b6e3f inherit pub_methods_class_s_p_h_1_1_solid"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5f78836b14304c117c33cac6f03f9f14 inherit pub_methods_class_s_p_h_1_1_solid"><td class="memItemLeft" align="right" valign="top"><a id="a5f78836b14304c117c33cac6f03f9f14"></a>
Real&#160;</td><td class="memItemRight" valign="bottom"><b>ContactStiffness</b> ()</td></tr>
<tr class="separator:a5f78836b14304c117c33cac6f03f9f14 inherit pub_methods_class_s_p_h_1_1_solid"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_class_s_p_h_1_1_base_material"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_class_s_p_h_1_1_base_material')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="class_s_p_h_1_1_base_material.html">SPH::BaseMaterial</a></td></tr>
<tr class="memitem:a6d527807557fca763861fc3720a07414 inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_base_material.html#a6d527807557fca763861fc3720a07414">assignBaseParticles</a> (<a class="el" href="class_s_p_h_1_1_base_particles.html">BaseParticles</a> *base_particles)</td></tr>
<tr class="separator:a6d527807557fca763861fc3720a07414 inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1761a471694fd68cd72e9530d7051f85 inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top"><a id="a1761a471694fd68cd72e9530d7051f85"></a>
std::string&#160;</td><td class="memItemRight" valign="bottom"><b>MaterialName</b> ()</td></tr>
<tr class="separator:a1761a471694fd68cd72e9530d7051f85 inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ace7031c99c89449760c6b1353730546a inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top"><a id="ace7031c99c89449760c6b1353730546a"></a>
std::string&#160;</td><td class="memItemRight" valign="bottom"><b>LocalParametersName</b> ()</td></tr>
<tr class="separator:ace7031c99c89449760c6b1353730546a inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab982ceed5715fee4081df6542a1584be inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top"><a id="ab982ceed5715fee4081df6542a1584be"></a>
Real&#160;</td><td class="memItemRight" valign="bottom"><b>ReferenceDensity</b> ()</td></tr>
<tr class="separator:ab982ceed5715fee4081df6542a1584be inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a58b5c9789347d9438922caba58c27cfc inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top"><a id="a58b5c9789347d9438922caba58c27cfc"></a>
virtual void&#160;</td><td class="memItemRight" valign="bottom"><b>writeToXmlForReloadLocalParameters</b> (std::string &amp;filefullpath)</td></tr>
<tr class="separator:a58b5c9789347d9438922caba58c27cfc inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5d10f0355dcb6aaef0ce5ed899e01d42 inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top"><a id="a5d10f0355dcb6aaef0ce5ed899e01d42"></a>
virtual void&#160;</td><td class="memItemRight" valign="bottom"><b>readFromXmlForLocalParameters</b> (std::string &amp;filefullpath)</td></tr>
<tr class="separator:a5d10f0355dcb6aaef0ce5ed899e01d42 inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:adeb7eb916d0fa8b2aceadd6ab15385c0 inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top"><a id="adeb7eb916d0fa8b2aceadd6ab15385c0"></a>
virtual void&#160;</td><td class="memItemRight" valign="bottom"><b>writeLocalParametersToVtuFile</b> (std::ofstream &amp;output_file)</td></tr>
<tr class="separator:adeb7eb916d0fa8b2aceadd6ab15385c0 inherit pub_methods_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
Protected Member Functions</h2></td></tr>
<tr class="memitem:a3926b5e0471f71195c23f24b4f2a6986"><td class="memItemLeft" align="right" valign="top"><a id="a3926b5e0471f71195c23f24b4f2a6986"></a>
virtual void&#160;</td><td class="memItemRight" valign="bottom"><b>assignDerivedMaterialParameters</b> () override</td></tr>
<tr class="separator:a3926b5e0471f71195c23f24b4f2a6986"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_methods_class_s_p_h_1_1_diffusion_reaction_material"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_class_s_p_h_1_1_diffusion_reaction_material')"><img src="closed.png" alt="-"/>&#160;Protected Member Functions inherited from <a class="el" href="class_s_p_h_1_1_diffusion_reaction_material.html">SPH::DiffusionReactionMaterial&lt; SolidParticles, Solid &gt;</a></td></tr>
<tr class="memitem:a3bae44e703cbe97ad064b928c5b43851 inherit pro_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="a3bae44e703cbe97ad064b928c5b43851"></a>
void&#160;</td><td class="memItemRight" valign="bottom"><b>insertASpecies</b> (std::string species_name)</td></tr>
<tr class="separator:a3bae44e703cbe97ad064b928c5b43851 inherit pro_methods_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:a40a2f2edfd257580954782ab0e625552"><td class="memItemLeft" align="right" valign="top"><a id="a40a2f2edfd257580954782ab0e625552"></a>
Real&#160;</td><td class="memItemRight" valign="bottom"><b>diff_cf_</b></td></tr>
<tr class="separator:a40a2f2edfd257580954782ab0e625552"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a77b4ef33f9425a289890466f74adb09c"><td class="memItemLeft" align="right" valign="top"><a id="a77b4ef33f9425a289890466f74adb09c"></a>
Real&#160;</td><td class="memItemRight" valign="bottom"><b>bias_diff_cf_</b></td></tr>
<tr class="separator:a77b4ef33f9425a289890466f74adb09c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a96ca43a3556e02b8fca5e2a92bde02cb"><td class="memItemLeft" align="right" valign="top"><a id="a96ca43a3556e02b8fca5e2a92bde02cb"></a>
Vecd&#160;</td><td class="memItemRight" valign="bottom"><b>bias_direction_</b></td></tr>
<tr class="separator:a96ca43a3556e02b8fca5e2a92bde02cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_class_s_p_h_1_1_diffusion_reaction_material')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="class_s_p_h_1_1_diffusion_reaction_material.html">SPH::DiffusionReactionMaterial&lt; SolidParticles, Solid &gt;</a></td></tr>
<tr class="memitem:a6c6417797c31d67fd80264feed5134cf inherit pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="a6c6417797c31d67fd80264feed5134cf"></a>
<a class="el" href="classsize__t.html">size_t</a>&#160;</td><td class="memItemRight" valign="bottom"><b>number_of_species_</b></td></tr>
<tr class="separator:a6c6417797c31d67fd80264feed5134cf inherit pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a8dee0dd78d46e4c3172c56ecea10fdf5 inherit pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="a8dee0dd78d46e4c3172c56ecea10fdf5"></a>
<a class="el" href="classsize__t.html">size_t</a>&#160;</td><td class="memItemRight" valign="bottom"><b>number_of_diffusion_species_</b></td></tr>
<tr class="separator:a8dee0dd78d46e4c3172c56ecea10fdf5 inherit pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a36d19c85b9317028d1fc3c8c36b91cb9 inherit pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="a36d19c85b9317028d1fc3c8c36b91cb9"></a>
std::map&lt; std::string, <a class="el" href="classsize__t.html">size_t</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>species_indexes_map_</b></td></tr>
<tr class="separator:a36d19c85b9317028d1fc3c8c36b91cb9 inherit pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:afe0d1dcde9013eaa58c221c03396f8f7 inherit pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="afe0d1dcde9013eaa58c221c03396f8f7"></a>
StdVec&lt; <a class="el" href="class_s_p_h_1_1_base_diffusion.html">BaseDiffusion</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>species_diffusion_</b></td></tr>
<tr class="separator:afe0d1dcde9013eaa58c221c03396f8f7 inherit pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5e934e496e6bc76cfac9878df8ff36d7 inherit pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="a5e934e496e6bc76cfac9878df8ff36d7"></a>
<a class="el" href="class_s_p_h_1_1_base_reaction_model.html">BaseReactionModel</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>species_reaction_</b></td></tr>
<tr class="separator:a5e934e496e6bc76cfac9878df8ff36d7 inherit pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae4f0b595243d37c432706f000aceae57 inherit pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td class="memItemLeft" align="right" valign="top"><a id="ae4f0b595243d37c432706f000aceae57"></a>
<a class="el" href="class_s_p_h_1_1_diffusion_reaction_particles.html">DiffusionReactionParticles</a>&lt; <a class="el" href="class_s_p_h_1_1_solid_particles.html">SolidParticles</a>, <a class="el" href="class_s_p_h_1_1_solid.html">Solid</a> &gt; *&#160;</td><td class="memItemRight" valign="bottom"><b>diffusion_reaction_particles_</b></td></tr>
<tr class="separator:ae4f0b595243d37c432706f000aceae57 inherit pro_attribs_class_s_p_h_1_1_diffusion_reaction_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_attribs_class_s_p_h_1_1_solid"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_class_s_p_h_1_1_solid')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="class_s_p_h_1_1_solid.html">SPH::Solid</a></td></tr>
<tr class="memitem:accf36ec8b84a813cb59f2d26bde11321 inherit pro_attribs_class_s_p_h_1_1_solid"><td class="memItemLeft" align="right" valign="top">Real&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_solid.html#accf36ec8b84a813cb59f2d26bde11321">contact_stiffness_</a></td></tr>
<tr class="separator:accf36ec8b84a813cb59f2d26bde11321 inherit pro_attribs_class_s_p_h_1_1_solid"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac34e19104645d0cf3e437a848c4d2b84 inherit pro_attribs_class_s_p_h_1_1_solid"><td class="memItemLeft" align="right" valign="top">Real&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_solid.html#ac34e19104645d0cf3e437a848c4d2b84">contact_friction_</a></td></tr>
<tr class="separator:ac34e19104645d0cf3e437a848c4d2b84 inherit pro_attribs_class_s_p_h_1_1_solid"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab8f7c450b27f159db71c9f03b0cc2352 inherit pro_attribs_class_s_p_h_1_1_solid"><td class="memItemLeft" align="right" valign="top"><a id="ab8f7c450b27f159db71c9f03b0cc2352"></a>
<a class="el" href="class_s_p_h_1_1_solid_particles.html">SolidParticles</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>solid_particles_</b></td></tr>
<tr class="separator:ab8f7c450b27f159db71c9f03b0cc2352 inherit pro_attribs_class_s_p_h_1_1_solid"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_attribs_class_s_p_h_1_1_base_material"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_class_s_p_h_1_1_base_material')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="class_s_p_h_1_1_base_material.html">SPH::BaseMaterial</a></td></tr>
<tr class="memitem:ae0bac240c414c0ebac27709066df27b9 inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top"><a id="ae0bac240c414c0ebac27709066df27b9"></a>
std::string&#160;</td><td class="memItemRight" valign="bottom"><b>material_name_</b></td></tr>
<tr class="separator:ae0bac240c414c0ebac27709066df27b9 inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2cfca881b60c9940f263382c272ddfe0 inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top"><a id="a2cfca881b60c9940f263382c272ddfe0"></a>
std::string&#160;</td><td class="memItemRight" valign="bottom"><b>parameters_name_</b></td></tr>
<tr class="separator:a2cfca881b60c9940f263382c272ddfe0 inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a719f71b050d882ef4290b244c45733d3 inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top">Real&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_base_material.html#a719f71b050d882ef4290b244c45733d3">rho_0_</a></td></tr>
<tr class="separator:a719f71b050d882ef4290b244c45733d3 inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a3191e8d463f5d56fe4820acab8289cff inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top"><a id="a3191e8d463f5d56fe4820acab8289cff"></a>
<a class="el" href="class_s_p_h_1_1_base_particles.html">BaseParticles</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>base_particles_</b></td></tr>
<tr class="separator:a3191e8d463f5d56fe4820acab8289cff inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac777c9aa6080bfa28fda1fdd651e5db8 inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top"><a id="ac777c9aa6080bfa28fda1fdd651e5db8"></a>
<a class="el" href="class_s_p_h_1_1_xml_engine.html">XmlEngine</a>&#160;</td><td class="memItemRight" valign="bottom"><b>reload_material_xml_engine_</b></td></tr>
<tr class="separator:ac777c9aa6080bfa28fda1fdd651e5db8 inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af9c494d663697f703e72b137297a842f inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top"><a id="af9c494d663697f703e72b137297a842f"></a>
<a class="el" href="namespace_s_p_h.html#a25348a626f1536e232c52f9717945f59">ParticleData</a>&#160;</td><td class="memItemRight" valign="bottom"><b>parameter_data_</b></td></tr>
<tr class="separator:af9c494d663697f703e72b137297a842f inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abaeb82ebd01dec231ee522a855472bfb inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memItemLeft" align="right" valign="top"><a id="abaeb82ebd01dec231ee522a855472bfb"></a>
<a class="el" href="namespace_s_p_h.html#ad964bd16bd649c1ee72aa32164405435">ParticleDataMap</a>&#160;</td><td class="memItemRight" valign="bottom"><b>parameter_maps_</b></td></tr>
<tr class="separator:abaeb82ebd01dec231ee522a855472bfb inherit pro_attribs_class_s_p_h_1_1_base_material"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>material class for electro_physiology. </p>
</div><h2 class="groupheader">Member Function Documentation</h2>
<a id="a2d0c9b6a7c8406b9c15bc9a78b3c73ca"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a2d0c9b6a7c8406b9c15bc9a78b3c73ca">&#9670;&nbsp;</a></span>initializeDiffusion()</h2>

<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">void SPH::MonoFieldElectroPhysiology::initializeDiffusion </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">
<p>Initialize diffusion material. </p>

<p>Implements <a class="el" href="class_s_p_h_1_1_diffusion_reaction_material.html#a1d77d8fb9015ffcb01fd4ae46b041902">SPH::DiffusionReactionMaterial&lt; SolidParticles, Solid &gt;</a>.</p>

<p>Reimplemented in <a class="el" href="class_s_p_h_1_1_local_mono_field_electro_physiology.html#a4f66b877b7ff349909cb766712ed50b5">SPH::LocalMonoFieldElectroPhysiology</a>.</p>

</div>
</div>
<hr/>The documentation for this class was generated from the following files:<ul>
<li>SPHINXsys/src/shared/materials/<a class="el" href="diffusion__reaction_8h_source.html">diffusion_reaction.h</a></li>
<li>SPHINXsys/src/shared/materials/<a class="el" href="diffusion__reaction_8cpp.html">diffusion_reaction.cpp</a></li>
</ul>
</div><!-- contents -->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Generated by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.17
</small></address>
</body>
</html>
